For the in-class modeling exercise (and part of PS #2) download Hb.pse.
Problem Set #10 and a PyMOL session file: SerRS.pse. Solutions
Problem Set #9 which makes use of papain.pse and FucI.pse. Solutions
Problem Set #7: (requires coke.pse). Here are the Solutions
Problem Set #6: (requires CAP.pse) and Solutions.
Practice Problem Set #5: (requires MBZ.pse). These are for practice and not to be turned in. Here are the Solutions.
Problem Set #4: (requires switch.pse & GUAA.pse). Solutions here.
Problem Set #3. PyMOL session files PrP.pse and rnase.pse are available. Refs in PS are:
Pace et al. (1998) J. Mol. Biol.279, 271-286.
Shoemaker et al. (1987) Nature 326, 563.
Wildegger et al. (1999) Nature Struct. Biol., 6, 550-553.
Pace et al. (2001) J. Mol. Biol.312, 393-404.
Problem Set #2 with instructions for using PyMOL (Solutions).
Problem Set #1 (Solutions are here). Also, link to C-H••••O H-bond review.
File last modified September 2007